Alex Mahone had one of the most dramatic changes of all of characters in Prison Break just trying to escape from Fox River Penitentiary. That said, as the show went on, Prison Break's story expanded to include an escape from a different prison and a government conspiracy that had overtaken the prison theme by season 4. By then, some of Prison Break's main characters had switched sides, including Michael and Lincoln's former nemesis, Alex Mahone.
Alexander Mahone was originally introduced as the ruthless, drug-addicted FBI agent whose intelligence matched Michael Scofield's. However, over time, he grew to sympathize with him, and Mahone's change of heart was one of the most tragic moments in Prison Break have also involved Mahone, and after getting revenge for the death of his son and helping the team track down the elusive Scylla, it appeared that his character arc had run out of steam. Mahone last appeared in Prison Break season 4 and was absent from season 5.
Prison Break Creator Paul Scheuring Didn't Know What To Do With Mahone In Season 5
Prison Break May Have Made A Mistake In Killing Mahone's Son
Prison Break has had four original seasons, a revival, and a movie. Although Alex Mahone was a key character, he was absent in the rebooted Prison Break season 5, despite the rest of the cast returning. As Mahone had become a fan-favorite by then, reviews had questioned why he had been left out. In an interview with Digital Spy, Robbert Knepper (T-Bag) explained, "he's a brilliant actor – but Paul [Sheuring] honestly said to me, 'I don't know what to do with that character'." Mahone's intense storylines were some of the best in the show, but this may have been detrimental to season 5.
Despite Mahone's flaws, his family was the driving force behind his actions.
One of the earliest scenes that showed Mahone's human side was when he sympathized with C-Note's medically complex daughter, sternly telling a character that they couldn't understand a parent's love. Despite Mahone's flaws, his family was the driving force behind his actions, and killing Mahone's son was a low moment for Prison Break. It appeared to have been written for little payoff other than his revenge killing. Once Mahone had completed his quest for revenge, there was little that could be done with his character, as even returning to his separated wife would have been bittersweet without their son.
What Happened To Alex Mahone At The End Of Prison Break Season 4?
Mahone Should Appear In The Prison Break Reboot
The end of Prison Break season 4 finally reveals that Mahone's allegiance lies with Michael after there had been some doubt over his loyalty for much of the season. Season 4 ends with Mahone in a relationship with his former colleague, Felicia, and visiting Michael's grave four years after the team gives Scylla to the United Nations. Though Mahone is not in Prison Break season 5, he plays a key role in the Prison Break movie, The Final Break. Mahone pretends to assist the FBI in an attempt to get his old job back while leading them off Michael's trail.

Prison Break's Reboot Will Fail If It Doesn't Fix A Problem That The Original Show Never Figured Out
While Prison Break was one of the best crime thrillers of the 2000s, one aspect hasn't aged well and must be fixed in a potential reboot.
Prison Break is being rebooted, but the main cast will not be returning. This means that the new Prison Break series could go in any direction. Though Wentworth Miller and Dominic Purcell will not be reprising their roles as Michael and Lincoln, it is still possible that William Fichtner could appear as Mahone to bridge the gap between seasons. Mahone's talents could be used both for and against the FBI, making him a versatile character to include. It was a mistake to leave Mahone out of Prison Break season 5, and the reboot should rectify this.
Source: Digital Spy

Prison Break
- Release Date
- 2005 - 2017-00-00
- Network
- FOX
- Showrunner
- Paul Scheuring
Cast
- Curtis Lum
- Sarah Wayne Callies
Prison Break tells the story of two brothers who must unravel a political conspiracy while escaping from one of the most secure places on Earth. When petty criminal Lincoln Burrows (Dominic Purcell) is falsely convicted of murdering the Vice President's brother, his own brother, Michael Scofield (Wentworth Miller), has himself incarcerated in order to stage a daring prison break using the blueprints of the facility he has tattooed on his body.
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